From Bioinfo

[edit] Microbial Genome Informatics Laboratory

We are focussed on elucidating mechanisms of host-pathogen interactions and pathogen specific adaptations. We combine comparative genomic approaches and experimental information from large scale genomic studies like microarrays, proteomics to identify and characterize novel adaptive features in pathogenic bacteria. We use Listeria monocytogenes EGDe as a model pathogen.

[edit] E. coli EHEC outbreak in Germany

General information:

Konsiliarlabor für Hämolytisch–Urämisches Syndrom (HUS)
(http://www.ehec.org)

BGI
(http://www.genomics.cn/en/news.php)

Robert-Koch-Institute
(http://www.rki.de/)

WIKI @ github
(https://github.com/ehec-outbreak-crowdsourced/BGI-data-analysis/wiki)

Blogs:

Pathogens: Genes and Genomes by Nick Loman
(http://pathogenomics.bham.ac.uk/blog/2011/06/ehec-genome-assembly/)

bacpathgenomics
(http://bacpathgenomics.wordpress.com/)

Mike @ ScienceBlogs
(http://scienceblogs.com/mikethemadbiologist/2011/06/i_dont_think_the_german_e_coli.php)

Sequence, Assembly, Analysis:

BGI repository @ NCBI
(http://www.ncbi.nlm.nih.gov/bioproject/67657)

FTP @ BGI
(ftp://ftp.genomics.org.cn/pub/Ecoli_TY-2482/)

LB2226692 Life Tech / University of Münster assembly
(http://www.ncbi.nlm.nih.gov/nuccore/AFOB00000000)

This information is being made available as a service to the community and uses third-party data.